pymem3dg._core

Description

Python wrapper around the DDG solver C++ library.

Classes

Adsorption	The adsorption parameters
Aggregation	The aggregation parameters
Bending	The bending parameters
Boundary	The boundary conditions
ConjugateGradient	conjugate Gradient propagator
DPD	The DPD parameters
Dirichlet	The Dirichlet energy parameters
Energy	The energy
Entropy	The entropy parameters
Euler	forward euler (gradient descent) integration
External	The external force parameters
Forces	The forces object
Geometry	Geometry class
MeshMutator	Settings for mesh mutator
MeshProcessor	Object to store mesh processing settings
Osmotic	The osmotic pressure parameters
Parameters	The parameters
Point	The Point energy parameters
Protein	The protein distribution parameters
SelfAvoidance	The SelfAvoidance energy parameters
System	The system
Tension	The surface tension parameters
Variation
VelocityVerlet	Velocity Verlet integration
spring	mesh spring forces parameters

Functions

getCylinder(radius, radialSubdivision, ...)	get face and vertex matrix of a non-capped cylinder
getData(plyName, elementName, propertyName)	read richData from .ply file
getDataElementName(plyName)	retrieve all richData element name from .ply file.
getDataPropertyName(plyName, elementName)	retrieve all richData property name from .ply file.
getDiamond(dihedral)	get face and vertex matrix of diamond
getFaceAndVertexMatrix(plyName)	read face matrix and vertex matrix from .ply file
getFaceSurfacePointClosestToEmbeddedCoordinate(...)	find the face surface point closest to a embedded coordinate
getHexagon(radius[, subdivision])	get face and vertex matrix of Hexagon
getIcosphere(radius[, subdivision])	get face and vertex matrix of icosphere
getTetrahedron()	get face and vertex matrix of tetrahedron
getVertexClosestToEmbeddedCoordinate(...[, ...])	find the index of vertex closest to a embedded coordinate
getVertexFurthestFromBoundary(faceMatrix, ...)	find the vertex furthest away from the boundaries
linearSubdivide(face, vertex, nSub)	subdivide the mesh with linear interpolation
loopSubdivide(face, vertex, nSub)	subdivide the mesh in loop scheme
processSoup(meshName)	process soup data in .ply and return face and vertex matrices.
startProfiler(filename)	start profiler
stopProfiler()	stop profiler