pymem3dg.visual

Description

Functions

animate(trajNc[, parameters, frames, ...])	Animate netcdf trajectory file
getColorbar(fig, range[, orientation, ...])	Generate color map
interlaceImages(fileList, videoName)	Helper to interlace images to video.
matplotlibStyle([small_size, medium_size, ...])	Helper to set matplotlib style
overlayColorbar()	Helper to overlay colorbar to image files
plotChemicalPotentials(ax, trajFile, parameters)	plot (components of) chemical potential
plotEnergy(ax, trajFile[, parameters, ...])	Plot (components of) energy :param ax: matplotlib Axes instance :type ax: matplotlib.axes.Axes :param trajFile: trajectory file name :type trajFile: str :param parameters: pymem3dg Parameters instance :type parameters: pymem3dg.Parameters :param zeroing: if shift the final energy state to zero.
plotMechanicalForces(ax, trajFile, parameters)	Plot (components of) mechanical forces
plotProteinDensity(ax, trajFile[, frames])	plot protein density :param ax: matplotlib Axes object :type ax: matplotlib.axes.Axes :param trajFile: netcdf trajectory file name :type trajFile: str :param parameters: pymem3dg Parameters instance :type parameters: pymem3dg.Parameters :param frames: list of frames to plot.
plotScreenshot(ax, pngFile, clim, label[, ...])	Helper to plot image file on axis
polyscopeStyle([setLengthScale])	Helper to set polyscope style
setPolyscopePermutations(psmesh, face, vertex)	set polyscope permutation convention
visualizeGeometry(geometry[, showBasics])	visualize pymem3dg.Geometry
visualizePly(plyFile, *vertexData)	Visualize .ply file using polyscope