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fenics-smart

Spatial Modeling Algorithms for Reaction-Transport [systems|models|equations]

Getting Started

Getting started with SMART

Mathematics

The SMART mathematical framework
The SMART numerical solution algorithms
Software implementation

Demo

Example 1: Turing patterns in 2D reaction-diffusion
Example 2: Simple 2D cell signaling model
Example 2 - 3D: Simple 3D cell signaling model
Example 3: Protein phosphorylation and diffusion in 3D cell geometry
Example 4: Reaction-diffusion of second messenger in 3D
Example 5: Generic cell signaling system in 3D
Example 6: Model for neuron calcium dynamics in 3D

API documentation

Contributing
SMART modules

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By Justin Laughlin

© Copyright 2023.

Last updated on Jul 21, 2024.